PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G225200.1
Common NameB456_008G225200, LOC105764992
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 512aa    MW: 56120.4 Da    PI: 4.7482
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G225200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95e-36451362102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  Gorai.008G225200.1  45 FLSKTYDMVDDPATDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 126
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k 
  Gorai.008G225200.1 127 LLRNISRRKP 136
                         *******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.31E-3640134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.7E-6641134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-4041134IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-204568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3245134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-2096108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MDGVSSSSNN QTDASTSGGG TQTATQPLPM PQPVAGHSAN GPPPFLSKTY DMVDDPATDA  60
IVSWSPTNNS FVVWNPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF  120
LRGQKHLLRN ISRRKPAHGH GHQQTQQPHG QSSSMGACVE VGKFGLEEEV ERLKRDKNVL  180
MQELVRLRQQ QQTTDNQLQN MVQRLQGMEQ RQQQMMSFLA KAVQNPSFFA QFVHQQNESN  240
RRISETNKKR RLKQDGIIGE DHSTASDGQI VKYQPLMNDA KAMLMQMMKG DASPRLDSFN  300
NSNEHTLIGD GSLSSSGLDG GNSSSRVSGV TLQEVSPTSG ISGHCPSAAI SEIQSSPCTT  360
SSERITTAEL PDVSALIGAE KPPSVSVTQT DIIMPDLSQI SEMVPESIVD IPTEMGNDGL  420
IDPDTLAVNG LLSIELDDIG SDPDIDALLV NSPFFHDLFP SPVCEEIEST SMEGKSKENE  480
GQAMDDGWDK SQHMDKLTEQ MGLLRSENKG I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D1e-293013412129Heat shock factor protein 1
5d5v_B1e-293013412129Heat shock factor protein 1
5d5u_B1e-293013412129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246253NKKRRLKQ
2247252KKRRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674060.0KR067406.1 Gossypium hirsutum HSF25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439304.10.0PREDICTED: heat shock factor protein HSF8 isoform X1
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0D2T5250.0A0A0D2T525_G
STRINGGLYMA16G13400.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-130heat shock transcription factor A1D
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]